Package index • popmaps2

Core POPMAPS workflow

tune_popmaps(): Tune POPMAPS parameters with cross-validation
adaptive_tune_popmaps(): Adaptively tune POPMAPS parameters
diagnose_tuning(): Diagnose a POPMAPS tuning result
suggest_tuning_grid(): Suggest a data-adaptive POPMAPS tuning grid
suggest_surface_tuning_grid(): Suggest a POPMAPS tuning grid from a candidate surface
compare_popmaps_surfaces(): Compare candidate POPMAPS interpolation surfaces
plot_surface_comparison(): Plot a POPMAPS surface comparison
write_surface_comparison_report(): Write a POPMAPS surface comparison report

prepare_popmaps_surface(): Prepare a POPMAPS interpolation surface
surface_from_points(): Create a POPMAPS surface from coordinates
locs_from_sf(): Convert sf points to a POPMAPS location table
surfaces_from_raster_stack(): Create candidate surfaces from a raster stack
surface_from_eems(): Convert EEMS output to a POPMAPS conductance surface
surface_from_feems(): Convert FEEMS output to a POPMAPS conductance surface

jackknife(): Estimate ancestry coefficents for empirical sites
jackknife_viz(): Visualize jackknife results
popmap_viz(): Legacy POPMAPS 1.03 ancestry-surface visualization
ptsNpop(): Partition points by genetically defined populations
bg_pop_pts(): Create background points for genetically defined populations
popmap_pca(): Calculate an environmental PCA
envplot(): Visualizing the environmental space of genetically defined populations